RESOURCE Epitope & MHC/HLA Immune Epitope Database (IEDB) The Allele Frequency Net Database NIH Tetramer Core Facility NetMHCpan NetMHCIIpan MHC Motif Viewer MHC Flurry Nextflow NeoEpitopes Prediction Pipeline (nextNEOpi) Taiwan Biobank HLA Database HLA COVID-19 Database TCR The International ImMunoGeneTics Information System (IMGT)VDJ Database (VDJdb)VDJtoolsTCRdistTCRdist3, & documentationClonotype Neighbor Graph Anlysis (CoNGA)TCR DatabaseTCRmodelTCR modelingTCRpMHCmodelsTCRdockscRepertoireTrexWAT3RT-cell COVID-19 Atlas Bioinformatics Tools & Resource How to Use t-SNE Effectively Gene Set Enrichment Analysis (GSEA) Ingenuity Pathway Analysis (IPA) EMBO e!Ensembl BioMart & MartView The Cancer Dependency Map (DepMap) Bioinformatics tools from Jinmiao Chen Lab Bioinformatics tools and database from Teichmann LabSeurat PipelineCIBERSORTxCellTypistSingle Cell Pathway AnalysisMair-Flo/Targeted Transcriptomics Single-Cell Sequencing Resource & Protocols Sanger Institute Analysis of Single Cell RNA-seq data course10x Genomics Single Cell Immune ProfilingSmart-seq3xpressSeq-Well protocols (Shalek Lab) Database, Resource, or Protocols The Human Protein AtlasHuman Cell AtlasNCI Human Tumor Atlas NetworkNCI The Cancer Genome Atlas (TCGA)Cross-tissue Immune Cell AtlasNIH Human Immunology Project Consortium (HIPC)NextstrainVirologicalSerratusDeeply Integrated human Single-Cell Omics Data (DISCO)SABER-FISH Scientific Talks & Webinars Human Immunome Project – Immunome Lab MeetingMIT Biology. Fall 2020: COVID-19, SARS-CoV-2, and the Pandemic SeriesMIT Biology. Fall 2021: COVID-19, SARS-CoV-2, and the Pandemic SeriesiBiologyGLOBAL IMMUNOTALKSSpatial Omics TalksPillarTalk by The Journal of ImmunologyJRNLclub, the online journal clubEarly Career Immunology
